EMBOSS explorer

ktrnascan_se

Finds tRNA genes using tRNAscan-SE (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Advanced section
Title of your job
Search mode
Training data set
Genetic Code for tRNA Isotype Prediction
Disable pseudo gene checking?
Show origin of first-pass hits?
Display results in ACeDB format?
Show codons instead of tRNA anticodons?
Show false positives from tRNAscan/EufindtRNA?
Show primary and secondary structure components to Cove scores?
Cove score cutoff
EufindtRNA search parameters
Intermediate score cutoff
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.