EMBOSS explorer

krnafold

Predicts secondary structure of single starnd RNA or DNA using RNAfold (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Additional section
fold algorithms
Advanced section
no GU pairs at the end of helices?
avoid isolated base pairs?
Dangling end options
Energy Parameters
rescale energy parameters to given temperature (C)
assume RNA molecule to be circular?
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.