EMBOSS explorer

kmuscle

Multiple sequence alignment using MUSCLE (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
File type of output alignment (clw, fasta, msf, html)
Additional section
Output order (aligned or input)
Gap Open Penalty
Gap Extension Penalty
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.