EMBOSS explorer


Multiple sequence alignment using MAFFT (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Advanced section
Calculation strategy.
Output order. 'input': same as input, 'aligned': aligned
Gap opening penalty (1.0 - 3.0)
Offset value (0.0 - 1.0)
Scoring matrix. Protein seq: 'BLOSUM30', 'BLOSUM45', 'BLOSUM62'(default), 'BLOSUM80', 'JTT100' or 'JTT200' Nucleotide seq: '1PAM', '20PAM' or '200PAM'(default)
Collects homologs from SwissProt by BLAST and performs profile-based alignments.?
Show homologs sequence?
Number of homologs sequences
Threshold of homologs sequences
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.