EMBOSS explorer

kmafft

Multiple sequence alignment using MAFFT (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Advanced section
strategy to calculate
output order
gap opening penalty (1.0 - 3.0)
offset value (0.0 - 1.0)
scoring matrix
collects homologs (only protein)?
show homologs (if any)?
number of homologs
threshold of homologs
sorry. this option is not ready
sorry. this option is not ready.
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.