EMBOSS explorer

kkalign

Multiple sequence alignment using Kalign (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Advanced section
Molecular (sequence) type. 'auto' (auto detection by input sequence), 'N'(nucleotide) or 'P'(protein)
gap creation penalty
gap extension penalty
terminal gap penalty
bonus score
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.